- w - Static variable in class org.cellmicrocosmos.cm2.gui.MyGradientBufferedImage
-
- wanderDancing - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
- wanderForFellow - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
- wanderForFellowEast(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and free lipid to the east until it meeting a fellow or
the border.
- wanderForFellowNorth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and free lipid to the north until it meeting a fellow or
the border.
- wanderForFellowSouth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and free lipid to the south until it meeting a fellow or
the border.
- wanderForFellowVertical(Lipid, int, float, float[]) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and free lipid to the east until it meeting a fellow or
the border.
- wanderForFellowWest(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and free lipid to the west until it meeting a fellow or
the border.
- wanderForFreedomEast(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and trapped lipid to the east until it is free.
- wanderForFreedomNorth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and trapped lipid to the north until it is free.
- wanderForFreedomSouth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and trapped lipid to the south until it is free.
- wanderForFreedomSouthEast(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and trapped lipid to the south-east until it is free.
- wanderForFreedomWest(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Move the placed and trapped lipid to the west until it is free.
- wanderForOptimalRotationNorthWest(Lipid, int, float, int) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
Wanders to the North and to the West for a Fellow and tries to find the
optimal y-Rotation, following the mode.
- wantsToStop - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
-
- WEBSTART_NAME - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.GENERAL
-
- widthX - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
-
- widthX - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
-
- widthY - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
-
- widthY - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
-
- widthZ - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
-
- widthZ - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
-
- workspace - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool
-
- write(Vector<Plugin>) - Static method in class org.cellmicrocosmos.cm2.pluginmanager.PluginIO
-
- writeAlgorithmSettings(Plugin, MembranePackingAlgorithm) - Method in class org.cellmicrocosmos.cm2.pluginmanager.PluginManager
-
- writeDataToDisc() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.ConfigIO
-
writes all values to the config-file
- writeDataToDisc() - Static method in class org.cellmicrocosmos.cm2.misc.ConfigParser
-
writes all values to the config-file
- writeMembrane(File, MembraneModel) - Method in class org.cellmicrocosmos.cm2.io.MembraneXmlWriter
-
Stores the Data of the passed MembraneModel in a JDOM Document which gets
written into the passed file.
- writeMembrane(int, int, CoordinateTransformationHints) - Method in class org.cellmicrocosmos.cm2.io.PDBWriter
-
This method writes the whole membrane in PDB format.
- writeReverseParsingInfo() - Method in class org.cellmicrocosmos.cm2.io.Compatibility
-
- writeToDisc() - Method in class org.cellmicrocosmos.cm2.pluginmanager.PluginManager
-
- writeToFile(File, Document) - Method in class org.cellmicrocosmos.cm2.io.DatabaseIO
-
Write the data in the passed Document into a file