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N

name - Variable in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeProfile
 
name - Variable in class org.cellmicrocosmos.cm2.dataobjects.Atom_3D
 
NAME_OF_THIS_PROGRAM - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.GENERAL
 
nearestAtomPoints(Molecule, Molecule) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
Determines the distance between two molecules about the nearest atoms of each molecule to the other molecule.
nearestTrianglePoints(Molecule, Molecule) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
Determines the distance between two molecules about the nearest triangles of each molecule to the other molecule.
neigbor - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.Bond
 
NEW_ENTRY - Static variable in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPE_CONSTANTS.MIFILE
 
NEWDATABASE - Variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
 
NewMembraneDialog - Class in org.cellmicrocosmos.cm2.gui.dialogs
The dialog that shows up when a new membrane gets created.
NewMembraneDialog(MembraneModel) - Constructor for class org.cellmicrocosmos.cm2.gui.dialogs.NewMembraneDialog
 
nextBoolean() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next random boolean value.
nextDouble(boolean) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next double The absval boolean indicates if the double is in the range from - to + or the absolut value.
nextDouble() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next absolute double value in the given range.
nextFloat(boolean) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next float The absval boolean indicates if the float is in the range from - to + or the absolut value.
nextFloat() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next absolute float value in the given range.
nextInt(int, boolean) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next int value in the given range.
nextInt(int) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
Returns the next absolute int value in the given range.
noBackground - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
 
nonelabel - Variable in class org.cellmicrocosmos.cm2.gui.elements.MembraneView.IntersectionPanel
 
NORMAL - Static variable in class org.cellmicrocosmos.cm2.functionality3d.Hud
 
NORMAL_ENTRY - Static variable in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPE_CONSTANTS.MIFILE
 
normalize() - Method in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
 
normalize() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
Normalizes the box and all of its field so that the center locates at the zero-point
normalVectorInPlane(Point3f, Point3f) - Static method in class org.cellmicrocosmos.cm2.misc.Cm2_Toolkit
Returns the normal vector of two given points which are lying in one plane.
notifyFileLoaded() - Method in interface org.cellmicrocosmos.cm2.interfaces.CM2AdditionalListener
 
notifyFrameChanged() - Method in interface org.cellmicrocosmos.cm2.interfaces.CM2AdditionalListener
 
numberOfIntervals - Variable in class org.cellmicrocosmos.cm2.io.PdbReader_3D
 
numberofvertices - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
 
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