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L

label - Variable in class org.cellmicrocosmos.cm2.gui.elements.MembraneView.IntersectionPanel
 
lastModified(int) - Static method in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPEUpdater
Get the lastModified number of the file defined by the database.
Layer - Class in org.cellmicrocosmos.cm2.dataobjects
The basic class for the membrane layers.
Layer(float, int) - Constructor for class org.cellmicrocosmos.cm2.dataobjects.Layer
 
layerId - Variable in class org.cellmicrocosmos.cm2.dataobjects.MicroDomain_3D
 
layerID2ResNameAtPosition - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.LimitationSettings
 
LAYOUT_FILE - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.IO
 
length - Variable in class org.cellmicrocosmos.cm2.gui.Searcher
 
light1 - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
 
light2 - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
 
LimitationSettings() - Constructor for class org.cellmicrocosmos.cm2.engine.DataPool.LimitationSettings
 
LimitedDocument - Class in org.cellmicrocosmos.cm2.gui.dialogs
A document that limits the text length of a textfield to a fixed size.
LimitedDocument(JTextComponent, int) - Constructor for class org.cellmicrocosmos.cm2.gui.dialogs.LimitedDocument
Constructs a new document with the specified limit of characters
LinearPlacing - Class in org.cellmicrocosmos.cm2.membranepackingalgorithms
Places the lipids in rows for each Domain\n\n" --> Works best with only one single type of\n" lipid used on each membrane side and\n" without any random rotation"
LinearPlacing() - Constructor for class org.cellmicrocosmos.cm2.membranepackingalgorithms.LinearPlacing
 
LipCountExtra - Variable in class org.cellmicrocosmos.cm2.io.MembraneMetaInfo
 
LipCountIntra - Variable in class org.cellmicrocosmos.cm2.io.MembraneMetaInfo
 
Lipid - Class in org.cellmicrocosmos.cm2.membranepackingalgorithm
This is an extension of the molecule class and is used either for representing a lipid in the membrane or a lipid template
Lipid(Lipid_3D, MembranePackingAlgorithm) - Constructor for class org.cellmicrocosmos.cm2.membranepackingalgorithm.Lipid
 
Lipid_3D - Class in org.cellmicrocosmos.cm2.dataobjects
An extended version of a molecule.
Lipid_3D() - Constructor for class org.cellmicrocosmos.cm2.dataobjects.Lipid_3D
 
LIPID_PERCENTAGE_DIVISOR - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.MISC
 
lipidPicking - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
 
lipidsBtn - Variable in class org.cellmicrocosmos.cm2.gui.elements.MembraneView.IntersectionPanel
 
lipidsEC - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
 
lipidsIC - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
 
LIPIDTYPE - Static variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
 
load() - Static method in class org.cellmicrocosmos.cm2.engine.DataPool.AtomValues
 
LOADDATABASE - Variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
 
loadFromFile(File) - Method in class org.cellmicrocosmos.cm2.io.DatabaseIO
Read the data from a file in a document that gets returned
LOADMEMBRANE - Variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
 
log(String, int) - Method in class org.cellmicrocosmos.cm2.coarsegrainsupport.ControlPanel
 
logs - Variable in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeEditor
 
lookUpForUpdates(int) - Static method in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPEUpdater
Looks for new entries in the implemented protein data banks.
lower - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
 
lower - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
 
lowestValue - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.atomlevelminimizer.Energies
 
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