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W

w - Static variable in class org.cellmicrocosmos.cm2.gui.MyGradientBufferedImage
 
wanderDancing - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
 
wanderForFellow - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
 
wanderForFellowEast(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and free lipid to the east until it meeting a fellow or the border.
wanderForFellowNorth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and free lipid to the north until it meeting a fellow or the border.
wanderForFellowSouth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and free lipid to the south until it meeting a fellow or the border.
wanderForFellowVertical(Lipid, int, float, float[]) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and free lipid to the east until it meeting a fellow or the border.
wanderForFellowWest(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and free lipid to the west until it meeting a fellow or the border.
wanderForFreedomEast(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and trapped lipid to the east until it is free.
wanderForFreedomNorth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and trapped lipid to the north until it is free.
wanderForFreedomSouth(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and trapped lipid to the south until it is free.
wanderForFreedomSouthEast(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and trapped lipid to the south-east until it is free.
wanderForFreedomWest(Lipid, int, float) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Move the placed and trapped lipid to the west until it is free.
wanderForOptimalRotationNorthWest(Lipid, int, float, int) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
Wanders to the North and to the West for a Fellow and tries to find the optimal y-Rotation, following the mode.
wantsToStop - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.TheWandererRookie
 
WEBSTART_NAME - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.GENERAL
 
widthX - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
 
widthX - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
 
widthY - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
 
widthY - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
 
widthZ - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
 
widthZ - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
 
workspace - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool
 
write(Vector<Plugin>) - Static method in class org.cellmicrocosmos.cm2.pluginmanager.PluginIO
 
writeAlgorithmSettings(Plugin, MembranePackingAlgorithm) - Method in class org.cellmicrocosmos.cm2.pluginmanager.PluginManager
 
writeDataToDisc() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.ConfigIO
writes all values to the config-file
writeDataToDisc() - Static method in class org.cellmicrocosmos.cm2.misc.ConfigParser
writes all values to the config-file
writeMembrane(File, MembraneModel) - Method in class org.cellmicrocosmos.cm2.io.MembraneXmlWriter
Stores the Data of the passed MembraneModel in a JDOM Document which gets written into the passed file.
writeMembrane(int, int, CoordinateTransformationHints) - Method in class org.cellmicrocosmos.cm2.io.PDBWriter
This method writes the whole membrane in PDB format.
writeReverseParsingInfo() - Method in class org.cellmicrocosmos.cm2.io.Compatibility
 
writeToDisc() - Method in class org.cellmicrocosmos.cm2.pluginmanager.PluginManager
 
writeToFile(File, Document) - Method in class org.cellmicrocosmos.cm2.io.DatabaseIO
Write the data in the passed Document into a file
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