Modifier and Type | Class and Description |
---|---|
class |
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
Modifier and Type | Class and Description |
---|---|
class |
AdvancedRandomPlacing
This algorithm places lipids at randomly picked positions.
|
class |
Distributor
Distributes lipids onto a membrane trying to reach the pre-defined absolute
lipid numbers.
|
class |
IntersectionDeleter
This tool algorithm deletes selected intersecting lipids
from the bilayer.
|
class |
LinearPlacing
Places the lipids in rows for each Domain\n\n"
--> Works best with only one single type of\n"
lipid used on each membrane side and\n"
without any random rotation"
|
class |
MembraneShifter
This tool algorihtm can be used to shift all membrane components
of one type (lipids of the inner and/or outer layer and/or proteins)
at once.
|
class |
RandomPlacing
Places the lipids randomly within membrane bounds and may
try to approach proteins or the membrane center and
twisting and shaking the lipids.
|
class |
SimulatedAnnealing
This algorithm represents the power of geometrical based membrane simulations.
|
class |
Tetris
See algorithm description...
|
class |
TheWandererRookie
The Wanderer is an algorithm looking for an opportunity to rest.
|
Modifier and Type | Class and Description |
---|---|
class |
Atom_Level_Minimizer
This is the base-class of the Atom-Level-Minimizer, described by my Diploma-Thesis.
|
Modifier and Type | Class and Description |
---|---|
static class |
Cm2_Toolkit.ToolkitMembranePackingAlgorithm
This class is only used for direct access to the different methods
of the MembranePackingAlgorithm interface.
|