Class and Description |
---|
Lipid
This is an extension of the molecule class and is used either for
representing a lipid in the membrane or a lipid template
|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
Molecule
This class is a wrapper class for the Molecule_3D class.
|
Class and Description |
---|
CoordinateTransformationHints
A sheet with coordinate Transformation settings used by the reverse PDBParser
|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
Class and Description |
---|
CoordinateTransformationHints
A sheet with coordinate Transformation settings used by the reverse PDBParser
|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
Class and Description |
---|
CoordinateTransformationHints
A sheet with coordinate Transformation settings used by the reverse PDBParser
|
Class and Description |
---|
Atom
This class is a wrapper for an Atom that is contained by a molecule.
|
AutoBox
The represents a box around the passed scatter-plot.
|
Bond
This class is used in order to represent a bonded neighbor of an atom.
|
CoordinateTransformationHints
A sheet with coordinate Transformation settings used by the reverse PDBParser
|
IllegalOperationException |
Lipid
This is an extension of the molecule class and is used either for
representing a lipid in the membrane or a lipid template
|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
MembranePackingAlgorithmInterface
Indicates Methods relevant for the MembranePackingAlgorithm.
|
MicroDomain
This class represents a microdomain in the membrane.
|
Molecule
This class is a wrapper class for the Molecule_3D class.
|
Protein
This is an extension of the molecule class and is representing a protein
|
SimpleRandom
Random Class generates simple random numbers.
|
Class and Description |
---|
IllegalOperationException |
Lipid
This is an extension of the molecule class and is used either for
representing a lipid in the membrane or a lipid template
|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
MembranePackingAlgorithmInterface
Indicates Methods relevant for the MembranePackingAlgorithm.
|
Molecule
This class is a wrapper class for the Molecule_3D class.
|
Class and Description |
---|
Atom
This class is a wrapper for an Atom that is contained by a molecule.
|
EnergyFunction
This class must be overwritten in oder to create an own Enegry Functin for
the Atom_level_minimizing Algorithm.
|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
MembranePackingAlgorithmInterface
Indicates Methods relevant for the MembranePackingAlgorithm.
|
Class and Description |
---|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
MembranePackingAlgorithmInterface
Indicates Methods relevant for the MembranePackingAlgorithm.
|
Class and Description |
---|
MembranePackingAlgorithm
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|