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H

h - Static variable in class org.cellmicrocosmos.cm2.gui.MyGradientBufferedImage
 
handleRubberBandSelection() - Method in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeEditor
 
hasAnyExtracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MicroDomain
Tests if any extracellular lipids are available for in this microdomain
hasAnyIntracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MicroDomain
Tests if any intracellular lipids are available for in this microdomain
hashEpsilon - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.atomlevelminimizer.Energies
 
hashSigma - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.atomlevelminimizer.Energies
 
hasMembraneAnyExtracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
Returns true if the membrane contains extracellular lipids.
hasMembraneAnyIntracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
Returns true if the membrane contains intracellular lipids.
hasMembraneAnyProteins() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
Returns true if the membrane contains proteins.
hasMultipleLayers() - Method in class org.cellmicrocosmos.cm2.dataobjects.MembraneModel
 
hasMultipleLayers() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
Checks if the model has more than the default layer
hasProteinWithId(String) - Method in class org.cellmicrocosmos.cm2.dataobjects.MembraneModel
Tests, wheter a Protein with the passed ID is currently present in the model
header - Variable in class org.cellmicrocosmos.cm2.io.MembraneMetaInfo
 
headers - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.ParameterMatrixPanel
 
HELP_FRAME_SCALE - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.GUI_SETTINGS_AND_CONTROLS
 
HelpBtn - Class in org.cellmicrocosmos.cm2.gui
The button to show the help window.
HelpBtn(Object) - Constructor for class org.cellmicrocosmos.cm2.gui.HelpBtn
 
HelpDialog - Class in org.cellmicrocosmos.cm2.gui.dialogs
Provides a Popup Help Dialog where the User can view and browse trough the program's help-pages.
HelpDialog() - Constructor for class org.cellmicrocosmos.cm2.gui.dialogs.HelpDialog
 
hideStereoView() - Method in class org.cellmicrocosmos.cm2.engine.Engine.J3DOperations
 
highlightMicroDomain(int) - Method in class org.cellmicrocosmos.cm2.engine.Engine.DatabaseOperations
 
highlightMicroDomain(int) - Method in class org.cellmicrocosmos.cm2.engine.Engine.MembraneOperations
 
highlightMicroDomain(int) - Method in class org.cellmicrocosmos.cm2.gui.elements.ComponentView
 
highlightMicroDomain(int) - Method in interface org.cellmicrocosmos.cm2.interfaces.DatabaseViewListener
 
highlightMicroDomain(int) - Method in interface org.cellmicrocosmos.cm2.interfaces.MembraneViewListener
 
HIGLIGHTING_COLOR_BRIGHT - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.MOLECULE_DEFAULTS
Color for protein Highlighting when editor has bright appearance
HIGLIGHTING_COLOR_DARK - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.MOLECULE_DEFAULTS
Color for protein Highlighting when editor has dark appearance
higlightMicroDomainIn3D(int) - Method in class org.cellmicrocosmos.cm2.functionality3d.MicroDomainManager
 
history - Variable in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeEditor
 
home - Static variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
 
HTTP_TEST_LINK - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.IO
 
Hud - Class in org.cellmicrocosmos.cm2.functionality3d
The HUD is needed to show different visual options e.g.
Hud(Canvas3D, PickCanvas) - Constructor for class org.cellmicrocosmos.cm2.functionality3d.Hud
 
hud - Variable in class org.cellmicrocosmos.cm2.functionality3d.Membrane3D
 
hyperlinkClicked(HyperlinkEvent) - Method in class org.cellmicrocosmos.cm2.gui.dialogs.HelpDialog
Invoked if a Hyperlink is clicked on the editorPane.
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