Modifier and Type | Method and Description |
---|---|
Protein_3D[] |
MembraneModel.getAllProteinsInDomain(int domainID,
int layerID) |
Protein_3D[] |
MicroDomain_3D.getAllProteinsOfType(java.lang.String code) |
Protein_3D[] |
MembraneModel.getAllProteinsOfType(java.lang.String code,
int domainID,
int layerID) |
Protein_3D |
MembraneModel.getProteinAt(int index)
gets the protein at the specifed index
|
Protein_3D[] |
MicroDomain_3D.getProteins() |
Protein_3D[] |
MembraneModel.getProteinsByPDBCode(java.lang.String PDBCode)
returns all Protein individues which are of the specified type.
|
Modifier and Type | Method and Description |
---|---|
java.util.Vector<Protein_3D> |
MembraneModel.getAllProteins() |
Modifier and Type | Method and Description |
---|---|
void |
MembraneModel.addProtein(Protein_3D pro,
int layerID)
adds a single Protein into the Model
|
void |
MembraneModel.deleteProtein(Protein_3D molecule_3D)
deletes the passed Protein
|
Modifier and Type | Method and Description |
---|---|
void |
Engine.MembraneOperations.removeProteinsFrom3D(Protein_3D[] prots2remove) |
Modifier and Type | Method and Description |
---|---|
void |
MembraneViewListener.removeProteinsFrom3D(Protein_3D[] prots2remove) |
Modifier and Type | Method and Description |
---|---|
Protein_3D |
PdbReader_3D.readProtein(java.io.File file,
int modelnumber,
java.util.Vector<java.lang.String> alteredAtoms)
Constructs a Protein_3D according to the file
|
Constructor and Description |
---|
Protein(Protein_3D original,
MembranePackingAlgorithm algo) |