Interface | Description |
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MembranePackingAlgorithmInterface |
Indicates Methods relevant for the MembranePackingAlgorithm.
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Class | Description |
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Application_Constants |
A class that provides constant values of the membrane editor.
|
Atom |
This class is a wrapper for an Atom that is contained by a molecule.
|
AutoBox |
The represents a box around the passed scatter-plot.
|
Bond |
This class is used in order to represent a bonded neighbor of an atom.
|
ConfigIO |
This class is for keeping various parameters as strings.
|
CoordinateTransformationHints |
A sheet with coordinate Transformation settings used by the reverse PDBParser
|
EnergyFunction |
This class must be overwritten in oder to create an own Enegry Functin for
the Atom_level_minimizing Algorithm.
|
GraphPanel |
This panel displays multiple graphs that can be updated frequently
|
Lipid |
This is an extension of the molecule class and is used either for
representing a lipid in the membrane or a lipid template
|
MembranePackingAlgorithm |
This is the required superclass for all Membrane Algorithms that can be used
by the membrane editor!
Membrane calculating algorithms need to extend this class and to implement
all of the methods from the MembranePackingAlgorithmInterface which this class
implements.
|
MembranePackingAlgorithmGUI |
This class can be used in order to show your algorithm-GUI to the user
|
MicroDomain |
This class represents a microdomain in the membrane.
|
Molecule |
This class is a wrapper class for the Molecule_3D class.
|
ParameterMatrixPanel |
This panel will display a JTable that also has a scrollable row header.
|
Protein |
This is an extension of the molecule class and is representing a protein
|
RotationToolkit |
This toolkit offers some useful static methods concerning calculations with
matrices
|
SimpleRandom |
Random Class generates simple random numbers.
|
UniqueRandom |
Random Class generates new Unique Random numbers.
|
Exception | Description |
---|---|
IllegalOperationException |