Modifier and Type | Method and Description |
---|---|
Lipid_3D[] |
MembraneModel.getAllExampleLipidsExtraInDomain(int domainID,
int layerID) |
Lipid_3D[] |
MembraneModel.getAllExampleLipidsIntraInDomain(int domainID,
int layerID) |
Lipid_3D[] |
MicroDomain_3D.getAllExampleLipidsOfTypeExtra(java.lang.String code) |
Lipid_3D[] |
MembraneModel.getAllExampleLipidsOfTypeExtra(java.lang.String code,
int domainID,
int layerID) |
Lipid_3D[] |
MicroDomain_3D.getAllExampleLipidsOfTypeIntra(java.lang.String code) |
Lipid_3D[] |
MembraneModel.getAllExampleLipidsOfTypeIntra(java.lang.String code,
int domainID,
int layerID) |
Lipid_3D[] |
MembraneModel.getAllLipidsExtraInDomain(int domainID,
int layerID) |
Lipid_3D[] |
MembraneModel.getAllLipidsIntraInDomain(int domainID,
int layerID) |
Lipid_3D[] |
MembraneModel.getAllLipidsOfTypeExtra(java.lang.String code,
int domainID,
int layerID) |
Lipid_3D[] |
MembraneModel.getAllLipidsOfTypeIntra(java.lang.String code,
int domainID,
int layerID) |
Lipid_3D |
MembraneModel.getExampleLipidAtExtra(int index)
Returns the sample lipid at the specified index
|
Lipid_3D |
MembraneModel.getExampleLipidAtIntra(int index)
Returns the sample lipid at the specified index
|
Lipid_3D[] |
MembraneModel.getExampleLipidsByPDBCodeExtra(java.lang.String PDBCode)
returns all Sample Lipid individues which are of the specified type.
|
Lipid_3D[] |
MembraneModel.getExampleLipidsByPDBCodeIntra(java.lang.String PDBCode)
returns all Sample Lipid individues which are of the specified type.
|
Lipid_3D[] |
MicroDomain_3D.getExampleLipidsExtra() |
Lipid_3D[] |
MicroDomain_3D.getExampleLipidsIntra() |
Lipid_3D |
MembraneModel.getHighestExampleLipid(int mode)
Returns the lipid with the higest percentage in the specified group
|
Lipid_3D |
MembraneModel.getLipidAtExtra(int index)
returns the lipid at the specified index
|
Lipid_3D |
MembraneModel.getLipidAtIntra(int index)
returns the lipid at the specified index
|
Lipid_3D[] |
MembraneModel.getLipidsByPDBCodeExtra(java.lang.String PDBCode)
returns all Lipid individues which are of the specified type.
|
Lipid_3D[] |
MembraneModel.getLipidsByPDBCodeIntra(java.lang.String PDBCode)
returns all Lipid individues which are of the specified type.
|
Modifier and Type | Method and Description |
---|---|
java.util.Vector<Lipid_3D> |
MembraneModel.getAllExampleLipidsExtra() |
java.util.Vector<Lipid_3D> |
MembraneModel.getAllExampleLipidsIntra() |
java.util.Vector<Lipid_3D> |
MembraneModel.getAllLipidsExtra() |
java.util.Vector<Lipid_3D> |
MembraneModel.getAllLipidsIntra() |
Modifier and Type | Method and Description |
---|---|
void |
MembraneModel.addExampleLipidExtra(Lipid_3D actLip,
int domainID,
int layerID)
Adds an sample lipid to the membrane
|
void |
MembraneModel.addExampleLipidIntra(Lipid_3D actLip,
int domainID,
int layerID)
Adds an sample lipid to the membrane
|
void |
MembraneModel.addLipidExtra(Lipid_3D lip,
int domainID,
int layerID)
adds a Lipid to the Model
|
void |
MembraneModel.addLipidIntra(Lipid_3D lip,
int domainID,
int layerID)
adds a Lipid to the Model
|
Lipid |
MembraneModel.createNextLipid(int membraneside,
Lipid_3D[] sampleLipids,
int domainID,
int layerID,
MembranePackingAlgorithm algo) |
void |
MembraneModel.deleteExampleLipidExtra(Lipid_3D lip) |
void |
MembraneModel.deleteExampleLipidIntra(Lipid_3D lip) |
void |
MembraneModel.deleteLipidExtra(Lipid_3D todelete)
deletes the specified lipid
|
void |
MembraneModel.deleteLipidIntra(Lipid_3D todelete)
deletes the specified lipid
|
Modifier and Type | Method and Description |
---|---|
static void |
DataPool.DNDBridge.activate(Lipid_3D mol) |
void |
Engine.MembraneOperations.addLipidExtra(Lipid_3D lip2add) |
void |
Engine.MembraneOperations.addLipidIntra(Lipid_3D lip2add) |
void |
Engine.MembraneOperations.alignExampleLipid(Lipid_3D lip,
int side) |
void |
Engine.MembraneOperations.removeLipidExtra(Lipid_3D lip2remove) |
void |
Engine.MembraneOperations.removeLipidIntra(Lipid_3D lip2remove) |
void |
Engine.MembraneOperations.removeLipidsFrom3D(Lipid_3D[] toremove) |
Modifier and Type | Method and Description |
---|---|
void |
PropertiesView.showLipid(Lipid_3D lip) |
Modifier and Type | Method and Description |
---|---|
void |
MembraneViewListener.addLipidExtra(Lipid_3D lip2add) |
void |
MembraneViewListener.addLipidIntra(Lipid_3D lip2add) |
void |
MembraneViewListener.alignExampleLipid(Lipid_3D lip,
int side) |
void |
MembraneViewListener.removeLipidExtra(Lipid_3D lip2add) |
void |
MembraneViewListener.removeLipidIntra(Lipid_3D lip2add) |
void |
MembraneViewListener.removeLipidsFrom3D(Lipid_3D[] toremove) |
Modifier and Type | Method and Description |
---|---|
Lipid_3D |
PdbReader_3D.readLipid(java.io.File file,
int modelnumber,
java.util.Vector<java.lang.String> alteredAtoms)
Constructs a Lipid_3D according to the file
|
Modifier and Type | Method and Description |
---|---|
static javax.vecmath.Matrix3f |
PdbReader_3D.autorotateUpwards(Lipid_3D lip)
Tries to autorotate the passed lipid, so that its head faces upwards
|
Modifier and Type | Field and Description |
---|---|
Lipid_3D[] |
MembranePackingAlgorithm.lipidsEC |
Lipid_3D[] |
MembranePackingAlgorithm.lipidsIC |
Constructor and Description |
---|
Lipid(Lipid_3D original,
MembranePackingAlgorithm algo) |