Package | Description |
---|---|
org.cellmicrocosmos.cm2.engine | |
org.cellmicrocosmos.cm2.interfaces | |
org.cellmicrocosmos.cm2.io | |
org.cellmicrocosmos.cm2.membranepackingalgorithm |
Modifier and Type | Method and Description |
---|---|
boolean |
Engine.restoreMembraneFromPDB(java.lang.String absolutePathOfPDB,
java.lang.String absolutePathToCm2,
CoordinateTransformationHints overwriteHints,
boolean checkMembraneState)
This method loads a PDB-Membrane into the running MembraneEditor.
|
boolean |
Engine.BasicOperations.restoreMembraneFromPDB(java.lang.String absolutePathOfPDB,
java.lang.String absolutePathOfCm2,
CoordinateTransformationHints overwriteHints,
boolean checkMembraneState)
Restore a membrane from a PDB file with the following options and
wait until the reverse parsing status is returned.
|
boolean |
Engine.BasicOperations.restoreMembraneFromPDB(java.lang.String absolutePathOfPDB,
java.lang.String absolutePathOfCm2,
CoordinateTransformationHints overwriteHints,
boolean checkMembraneState,
boolean waitForStatus)
Restore a membrane from a PDB file with the following options
(Set optional parameters to null if not needed):
|
Modifier and Type | Method and Description |
---|---|
boolean |
GuiListener.restoreMembraneFromPDB(java.lang.String absolutePathOfPDB,
java.lang.String absolutePathToCm2,
CoordinateTransformationHints overwriteHints,
boolean checkMembraneState) |
Modifier and Type | Method and Description |
---|---|
CoordinateTransformationHints |
ReversePDBParser.getHints(java.io.File file) |
Modifier and Type | Method and Description |
---|---|
MembraneModel |
ReversePDBParser.restoreMembraneModelFromPdbFile(java.io.File pdbFile,
java.io.File cm2File,
CoordinateTransformationHints overwriteHints) |
boolean |
PDBWriter.writeMembrane(int domainID,
int layerID,
CoordinateTransformationHints tHints)
This method writes the whole membrane in PDB format.
|
Modifier and Type | Method and Description |
---|---|
boolean |
MembranePackingAlgorithm.restoreMembraneFromPDB(java.lang.String absolutePathOfPDB,
java.lang.String absolutePathToCm2,
CoordinateTransformationHints overwriteHints,
boolean checkMembraneState)
Restore a membrane from a PDB file with the following options
(Set optional parameters to null if not needed):
|