- h - Static variable in class org.cellmicrocosmos.cm2.gui.MyGradientBufferedImage
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- handleRubberBandSelection() - Method in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeEditor
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- hasAnyExtracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MicroDomain
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Tests if any extracellular lipids are available for in this microdomain
- hasAnyIntracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MicroDomain
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Tests if any intracellular lipids are available for in this microdomain
- hashEpsilon - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.atomlevelminimizer.Energies
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- hashSigma - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.atomlevelminimizer.Energies
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- hasMembraneAnyExtracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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Returns true if the membrane contains extracellular lipids.
- hasMembraneAnyIntracellularLipids() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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Returns true if the membrane contains intracellular lipids.
- hasMembraneAnyProteins() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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Returns true if the membrane contains proteins.
- hasMultipleLayers() - Method in class org.cellmicrocosmos.cm2.dataobjects.MembraneModel
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- hasMultipleLayers() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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Checks if the model has more than the default layer
- hasProteinWithId(String) - Method in class org.cellmicrocosmos.cm2.dataobjects.MembraneModel
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Tests, wheter a Protein with the passed ID is currently present in the
model
- header - Variable in class org.cellmicrocosmos.cm2.io.MembraneMetaInfo
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- headers - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.ParameterMatrixPanel
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- HELP_FRAME_SCALE - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.GUI_SETTINGS_AND_CONTROLS
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- HelpBtn - Class in org.cellmicrocosmos.cm2.gui
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The button to show the help window.
- HelpBtn(Object) - Constructor for class org.cellmicrocosmos.cm2.gui.HelpBtn
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- HelpDialog - Class in org.cellmicrocosmos.cm2.gui.dialogs
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Provides a Popup Help Dialog where the User can view and browse trough the
program's help-pages.
- HelpDialog() - Constructor for class org.cellmicrocosmos.cm2.gui.dialogs.HelpDialog
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- hideStereoView() - Method in class org.cellmicrocosmos.cm2.engine.Engine.J3DOperations
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- highlightMicroDomain(int) - Method in class org.cellmicrocosmos.cm2.engine.Engine.DatabaseOperations
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- highlightMicroDomain(int) - Method in class org.cellmicrocosmos.cm2.engine.Engine.MembraneOperations
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- highlightMicroDomain(int) - Method in class org.cellmicrocosmos.cm2.gui.elements.ComponentView
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- highlightMicroDomain(int) - Method in interface org.cellmicrocosmos.cm2.interfaces.DatabaseViewListener
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- highlightMicroDomain(int) - Method in interface org.cellmicrocosmos.cm2.interfaces.MembraneViewListener
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- HIGLIGHTING_COLOR_BRIGHT - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.MOLECULE_DEFAULTS
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Color for protein Highlighting when editor has bright appearance
- HIGLIGHTING_COLOR_DARK - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.MOLECULE_DEFAULTS
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Color for protein Highlighting when editor has dark appearance
- higlightMicroDomainIn3D(int) - Method in class org.cellmicrocosmos.cm2.functionality3d.MicroDomainManager
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- history - Variable in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeEditor
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- home - Static variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
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- HTTP_TEST_LINK - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.IO
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- Hud - Class in org.cellmicrocosmos.cm2.functionality3d
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The HUD is needed to show different visual options e.g.
- Hud(Canvas3D, PickCanvas) - Constructor for class org.cellmicrocosmos.cm2.functionality3d.Hud
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- hud - Variable in class org.cellmicrocosmos.cm2.functionality3d.Membrane3D
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- hyperlinkClicked(HyperlinkEvent) - Method in class org.cellmicrocosmos.cm2.gui.dialogs.HelpDialog
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Invoked if a Hyperlink is clicked on the editorPane.