- name - Variable in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeProfile
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- name - Variable in class org.cellmicrocosmos.cm2.dataobjects.Atom_3D
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- NAME_OF_THIS_PROGRAM - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.GENERAL
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- nearestAtomPoints(Molecule, Molecule) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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Determines the distance between two molecules about the nearest atoms of
each molecule to the other molecule.
- nearestTrianglePoints(Molecule, Molecule) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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Determines the distance between two molecules about the nearest triangles
of each molecule to the other molecule.
- neigbor - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.Bond
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- NEW_ENTRY - Static variable in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPE_CONSTANTS.MIFILE
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- NEWDATABASE - Variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
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- NewMembraneDialog - Class in org.cellmicrocosmos.cm2.gui.dialogs
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The dialog that shows up when a new membrane gets created.
- NewMembraneDialog(MembraneModel) - Constructor for class org.cellmicrocosmos.cm2.gui.dialogs.NewMembraneDialog
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- nextBoolean() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next random boolean value.
- nextDouble(boolean) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next double The absval boolean indicates if the double is
in the range from - to + or the absolut value.
- nextDouble() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next absolute double value in the given range.
- nextFloat(boolean) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next float The absval boolean indicates if the float is
in the range from - to + or the absolut value.
- nextFloat() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next absolute float value in the given range.
- nextInt(int, boolean) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next int value in the given range.
- nextInt(int) - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.UniqueRandom
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Returns the next absolute int value in the given range.
- noBackground - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
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- nonelabel - Variable in class org.cellmicrocosmos.cm2.gui.elements.MembraneView.IntersectionPanel
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- NORMAL - Static variable in class org.cellmicrocosmos.cm2.functionality3d.Hud
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- NORMAL_ENTRY - Static variable in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPE_CONSTANTS.MIFILE
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- normalize() - Method in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
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- normalize() - Method in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
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Normalizes the box and all of its field so that the center locates at the
zero-point
- normalVectorInPlane(Point3f, Point3f) - Static method in class org.cellmicrocosmos.cm2.misc.Cm2_Toolkit
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Returns the normal vector of two given points
which are lying in one plane.
- notifyFileLoaded() - Method in interface org.cellmicrocosmos.cm2.interfaces.CM2AdditionalListener
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- notifyFrameChanged() - Method in interface org.cellmicrocosmos.cm2.interfaces.CM2AdditionalListener
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- numberOfIntervals - Variable in class org.cellmicrocosmos.cm2.io.PdbReader_3D
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- numberofvertices - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
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