- label - Variable in class org.cellmicrocosmos.cm2.gui.elements.MembraneView.IntersectionPanel
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- lastModified(int) - Static method in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPEUpdater
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Get the lastModified number of the file defined by the database.
- Layer - Class in org.cellmicrocosmos.cm2.dataobjects
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The basic class for the membrane layers.
- Layer(float, int) - Constructor for class org.cellmicrocosmos.cm2.dataobjects.Layer
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- layerId - Variable in class org.cellmicrocosmos.cm2.dataobjects.MicroDomain_3D
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- layerID2ResNameAtPosition - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.LimitationSettings
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- LAYOUT_FILE - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.IO
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- length - Variable in class org.cellmicrocosmos.cm2.gui.Searcher
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- light1 - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
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- light2 - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
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- LimitationSettings() - Constructor for class org.cellmicrocosmos.cm2.engine.DataPool.LimitationSettings
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- LimitedDocument - Class in org.cellmicrocosmos.cm2.gui.dialogs
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A document that limits the text length of a textfield to a fixed size.
- LimitedDocument(JTextComponent, int) - Constructor for class org.cellmicrocosmos.cm2.gui.dialogs.LimitedDocument
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Constructs a new document with the specified limit of characters
- LinearPlacing - Class in org.cellmicrocosmos.cm2.membranepackingalgorithms
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Places the lipids in rows for each Domain\n\n"
--> Works best with only one single type of\n"
lipid used on each membrane side and\n"
without any random rotation"
- LinearPlacing() - Constructor for class org.cellmicrocosmos.cm2.membranepackingalgorithms.LinearPlacing
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- LipCountExtra - Variable in class org.cellmicrocosmos.cm2.io.MembraneMetaInfo
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- LipCountIntra - Variable in class org.cellmicrocosmos.cm2.io.MembraneMetaInfo
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- Lipid - Class in org.cellmicrocosmos.cm2.membranepackingalgorithm
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This is an extension of the molecule class and is used either for
representing a lipid in the membrane or a lipid template
- Lipid(Lipid_3D, MembranePackingAlgorithm) - Constructor for class org.cellmicrocosmos.cm2.membranepackingalgorithm.Lipid
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- Lipid_3D - Class in org.cellmicrocosmos.cm2.dataobjects
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An extended version of a molecule.
- Lipid_3D() - Constructor for class org.cellmicrocosmos.cm2.dataobjects.Lipid_3D
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- LIPID_PERCENTAGE_DIVISOR - Static variable in class org.cellmicrocosmos.cm2.constants.CM2_CONSTANTS.MISC
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- lipidPicking - Static variable in class org.cellmicrocosmos.cm2.engine.DataPool.J3DSettings
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- lipidsBtn - Variable in class org.cellmicrocosmos.cm2.gui.elements.MembraneView.IntersectionPanel
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- lipidsEC - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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- lipidsIC - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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- LIPIDTYPE - Static variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.MembranePackingAlgorithm
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- load() - Static method in class org.cellmicrocosmos.cm2.engine.DataPool.AtomValues
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- LOADDATABASE - Variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
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- loadFromFile(File) - Method in class org.cellmicrocosmos.cm2.io.DatabaseIO
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Read the data from a file in a document that gets returned
- LOADMEMBRANE - Variable in class org.cellmicrocosmos.cm2.io.FileIOHandler
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- log(String, int) - Method in class org.cellmicrocosmos.cm2.coarsegrainsupport.ControlPanel
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- logs - Variable in class org.cellmicrocosmos.cm2.coarsegrainsupport.MoleculeEditor
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- lookUpForUpdates(int) - Static method in class org.cellmicrocosmos.cm2.io.ppe.toolbox.PPEUpdater
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Looks for new entries in the implemented protein data banks.
- lower - Variable in class org.cellmicrocosmos.cm2.dataobjects.MyBounds
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- lower - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithm.AutoBox
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- lowestValue - Variable in class org.cellmicrocosmos.cm2.membranepackingalgorithms.atomlevelminimizer.Energies
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