Intro

2.6.2023

DESIGN X BIOINFORMATICS meets Network Biology

A Student Workshop at Royal College of Art 2023

Since the era of our cave-drawing ancestors, humans have possessed innate cognitive faculties that are naturally engaged by diagrams. Diagrams notably play a key role in conveying information in biology. Such diagrams can be found, e.g., in every good handbook for biology.

The need for standardizing the representation of biological diagrams became apparent in the 2000’s with the advent of computational systems biology – that focused on building, exchanging and analysing large and complex diagrams representing the molecular events occurring in whole biological systems. Therefore, a community composed of biochemists, modellers, and computer scientists developed, the Systems Biology Graphical Notation (SBGN), a set of standard visual languages designed for the representation of biochemical  networks in a consistent and clear manner. But although this standard is now around for a few years, continuously new challenges are coming up which need to be tackled – therefore, the standard and the way it is communicated is continuously evolving.

In 2022, we kicked-off the DESIGN X BIOINFORMATICS initiative with a one day workshop. One of the presentations introduced already the idea of standardization in systems biology.

Therefore, we decided to provide this year on June 2 2023 a workshop introducing and discussing SBGN. During the workshop, you will learn the basics of network biology, get an introduction to SBGN, and you will be introduced to a tool which can be used to draw corresponding maps. Two SBGN developers will be present at the workshop.

During the design activity, the workshop will explore together with you different ideas how to improve network biology representations and visualizations. We will come up with three different briefs and you will work in groups to tackle the challenges. 

Moreover, we will announce a student competition based on this design activity during the workshop which will run until 18th June!

For details and to register, please have a look here.


DESIGN X BIOINFORMATICS – the initiative

With this initiative, we are intending to bring together Bioinformaticians from various fields, and designers, design researchers, as well as medical and scientific illustrators to discuss future challenges in the context of Bioinformatics and Design.

Being an area which often combines abstract and spatial data, and often taking standardisation approaches into account, Bioinformatics provides a number of opportunities for future designers.

More …


2.12.2023

Student Competition 2022 Winners Announced

Congratulations go to all our winners! Thanks go also to all contributors and our committee for contributing to this challenge! More info here.


9.9.2022

DESIGN X BIOINFORMATICS 2022: A hybrid workshop in London

On Friday September 9, the DESIGN X BIOINFORMATICS workshop took place. This was indeed the first time that our new IDE/GID studio in Battersea was used for a workshop!

We had around 70 participants in London in-person, more than 130 participants online, and additional in-person participation from Paris. We kicked of a very fruitful discussion concerning Bioinformatics, Biovisualization and its relation to Design and had a great hands-on workshop organized by Zowie and Louis from Fashion.   

Two sessions, BIOINFORMATICS 2 DESIGN, and DESIGN 2 BIOINFORMATICS were accompanied by keynotes by David Goodsell from the Scripps Research Institute and Daria Jelonek from Studio Above&Below.

More info is available from here.

Probably for now, we generated more questions than answers, but exactly this was the idea of this workshop!

Thanks go to our attendees, committee members and amazing speakers!

Get the poster for DESIGN X BIOINFORMATICS for here!


16.8.2022

DESIGN X BIOINFORMATICS 2022 – Special Issue published

A special issue in the Journal of Integrative Bioinformatics which was published in Special Issue 2/2022 (more at the Special Issue website).

Workshop 2022

David S. Goodsell – 1st Keynote Speaker

Integrative illustration of a JCVI-syn3A minimal cell

David Goodsell represents one of the very rare combinations of being a well-established scientist and artist whose publications as well as illustrations are known to a large community. David pioneered the illustration of molecular structures, played an important role in establishing the visual side of the Protein Data Bank – an indispensable Bioinformatics resource and nowadays gold standard – and pushed the boundaries over decades of bio visualization regarding proteins, molecular structures, and crowded cells.

David is Professor of Computational Biology at the Department of Integrative Structural and Computational Biology at the Scripps Research Institute and a research professor at the Center for Integrative Proteomics Research at Rutgers State University (New Jersey).

Special Issue Session

The papers of this special issue session can be found here.

Falk Schreiber & Tobias Czauderna:
Design considerations for representing systems biology information with the Systems Biology Graphical Notation

Davide Spalvieri et al.:
Design–a new way to look at old molecules

Monica Zoppè:
Colors in the representation of biological structures

Laura Garrison & Stefan Bruckner:
Considering best practices in color palettes for molecular visualizations

Daria Jelonek – 2nd Keynote Speaker

Digital Materiality & Data

Daria Jelonek leads together with Perry-James Sugde the Studio Above&Beyond. Both of them graduated from the Royal College of Art. Their London-based studio designs exhibitions – often (live) data-driven and utilizing Augmented and/or Mixed Reality technology. They combine computational design with speculative storytelling and art for enabling improved future human interactions with the environment. They were exhibiting at renowned places in e.g. Hong Kong, Seoul, Wrocław, Milano, Berlin, and of course London.

Workshop Activity Session

This interactive session will trigger the discussion between designers and bioinformaticians to explore future steps forward. This session will be organized by designers to provide insights how a typical design and ideation process would address these underlying questions.

The interactive session will happen hybrid – activities will be delivered online as well as in-person at the RCA. The presentation of the results will happen then online during a Zoom session.

Special Issue

Journal of Integrative Bioinformatics – Issue 2/2022 (Volume 19.2) – Design X Bioinformatics

Please see here the accepted articles:

1.
Garrison L, Bruckner S. Considering best practices in color palettes for molecular visualizations. Journal of Integrative Bioinformatics [Internet]. 2022;19(2):1–14. Available from: https://doi.org/10.1515/jib-2022-0016
1.
Goodsell DS. Integrative illustration of a JCVI-syn3A minimal cell. Journal of Integrative Bioinformatics [Internet]. 2022;19(2):1–9. Available from: https://doi.org/10.1515/jib-2022-0013
1.
Schreiber F, Czauderna T. Design considerations for representing systems biology information with the Systems Biology Graphical Notation. Journal of Integrative Bioinformatics [Internet]. 2022;19(2):1–15. Available from: https://doi.org/10.1515/jib-2022-0024
1.
Sommer B, Inoue D, Baaden M. Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design. Journal of Integrative Bioinformatics [Internet]. 2022;19(2):1–8. Available from: https://doi.org/10.1515/jib-2022-0037
1.
Spalvieri D, Mauviel AM, Lambert M, Férey N, Sacquin-Mora S, Chavent M, et al. Design–a new way to look at old molecules. Journal of Integrative Bioinformatics [Internet]. 2022;19(2):1–14. Available from: https://doi.org/10.1515/jib-2022-0020
1.
Zoppè M. Colors in the representation of biological structures. Journal of Integrative Bioinformatics [Internet]. 2022;1–9. Available from: https://doi.org/10.1515/jib-2022-0021

The full special issue will be soon available here:

https://www.degruyter.com/journal/key/jib/19/2/html

Schedule 2022

Organisers

Organisers Student Workshop 2023

Chairs

Dr. Bjorn Sommer, Royal College of Art, London, UKProf. Dr. Ugur Dogrusoz, Bilkent University, Ankara, TurkeyDr. Adrien Rougny, Independent Researcher, Paris, France

Co-Chairs

Dr. Alexander Mazein, University of Luxembourg, Esch-sur-Alzette, Luxembourg

Prof. Dr. Tobias Czauderna, HS Mittweida, Mittweida, Germany

Dr. Irina Balaur, University of Luxembourg, Esch-sur-Alzette, Luxembourg

Dr. Carolina Ramirez-Figueroa, Royal College of Art, London, UK

Organisers Workshop 2022

Bioinformatics 2 Design
Session Organisers/Special Issue Editors

Dr. Bjorn Sommer, Royal College of Art, London, UKProf. Dr. Daisuke Inoue, Kyushu University, Fukuoka, JapanDr. Marc Baaden, CNRS/Université Paris Diderot, Paris, France

Design 2 Bioinformatics
Session Organisers/Workshop Activity

Louis Alderson-Bythell, Royal College of Art, London, UKDr. Bjorn Sommer, Royal College of Art, London, UK

Co-Organizers/International Program Committee

Louis Alderson-Bythell, Royal College of Art, London, UK

Zowie Broach, Royal College of Art, London, UK

Dr. Jan Byska, Masaryk University, Brno, Czech Republic

Prof. Dr. Ming Chen, Zhejiang University, Hangzhou, China

Dr. Victoria Geaney, Central Saint Martins/Royal College of Art, London, UK

Prof. Dr. David Goodsell, Scripps Institute, La Jolla, USA

Dr. Philipp Gough, University of Sydney, Sydney, Australia

Prof. Dr. Eduard Gröller, TU Wien, Vienna, Austria

Prof. Dr. Yasuyuki Hirai, Kyushu University, Fukuoka, Japan

Prof. Dr. Ralf Hofestädt, University of Bielefeld, Bielefeld, Germany

Prof. Dr. Chihiro Hiramatsu, Kyushu University, Fukuoka, Japan

Prof. Tokushu Inamura, Kyushu University, Fukuoka, Japan

Prof. Dr. Hiroshi Ito, Kyushu University, Fukuoka, Japan

Prof. Dr. Kazuhiro Jo, Kyushu University, Fukuoka, Japan

Prof. Dr. Akihiko Konagaya, Tokyo Institute of Technology, Tokyo, Japan

Jerry/Zidong Lin, School of Design, Royal College of Art, UK

Dr. Céline Mougenot, Imperial College, London, UK

Dr. Carolina Ramirez-Figueroa, School of Communication, Royal College of Art, UK

Dr. Nurul ‘Ayn Ahmad Sayuti, Universiti Teknologi MARA (UiTM) Kedah, Malaysia

Prof. Dr. Falk Schreiber, Konstanz University, Konstanz, Germany

Prof. Dr. Noeska Smit, University of Bergen, Bergen, Norway

Sander Välk, Imperial College, London, UK

Dr. Monica Zoppé, Institute of BioPhysics/IBF, Pisa, Italy

Workshop Activity Helpers

Special thanks for workshop support go to:

Dr. Fernando Galdon, School of Design, Royal College of Art, London, UK

Steph Jump, School of Design, Royal College of Art, London, UK

Jerry/Zidong Lin, School of Design, Royal College of Art, UK

Funding Support

This event is kindly funded by the Royal College of Art Research & Knowledge Exchange, RKE Reference: 80006463.