CELLmicrocosmos Cell Modeling projects

With the CELLmicrocosmos 3.2 project seminar a new series of projects started at Bielefeld University. Using the software packages developed in the previous semesters, it was now possible to develope plug-ins, e.g. based on the MembraneEditor plugin-interface, or to generate cell models used for different applications.

WS2010/2011 CELLmicrocosmos Cell Modelling

periode 11.10.2010-04.02.2011
leader Björn Sommer
doc.number 392170
amount 2-4 SWS

Christian Gamroth
Rudolf Warkentin
Pascal Witthus

link http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=19565395
summary The PathwayIntegration was extended by a new node placing algorithm, mapping 2D layouts onto the cell component's surface. A new cell component builder was created which was later the base for the new CellEditor (Cm 3.2, not released by now). For the MembraneEditor, the PDB Exporter was improved.

SS2011 CELLmicrocosmos Cell Modelling

periode 04.04.2011-15.07.2011
leader Björn Sommer
doc.number 392170
amount 2-4 SWS

Yvonne Dyck
Jonas Osterloff
Raphael-Elias Reisch

link http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=22905758
summary The CellExplorer was extended by a better cell component distribution, a two-dimensional map to improve the orientation in the cell environment and a simple audio support (which is currently not really used).

 WS2011/2012 CELLmicrocosmos Cell Modelling

periode 10.10.2011-03.02.2012
leader Björn Sommer
doc.number 392170
amount 4 SWS

Yan Zhou

link http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=25753656
summary During this project, the first version of the Vesicle Builder for the MembraneEditor was created. Find the actual version in the forum.

SS2012 CELLmicrocosmos Cell Modelling

periode 02.04.2012-13.07.2012
leader Björn Sommer
doc.number 392170
amount 4 SWS

Christian Bender
Tobias Hoppe

link http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=29494624
summary The first cell animation of the CELLmicrocosmos project with Blender was finished during this project. The result was shown at the cinema CinemaxX Bielefeld, of course in stereoscopic 3D! More ...

WS2012/2013 CELLmicrocosmos Cell Modelling

periode 08.10.2012-01.02.2013
leader Björn Sommer


amount 4 SWS
participants Nils Rothe
link http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=32872519
summary A new three-dimensional cell model of a nerve cell was created by using Fiji. This model will be used for the CellExplorer in the future.

SS2013 CELLmicrocosmos Cell Modelling

periode 08.04.2013-19.07.2013
leader Björn Sommer


amount 2-4 SWS
participants Niklas Biere
Denis Kramer
Lisa-Maria Hertwig
Gökhan Konvanci
Sandra Spönemann
Plamen Velchov
Markus Wendel
Rabea Wick
Ann-Kathrin Ziesenis
link http://ekvv.uni-bielefeld.de/kvv_publ/publ/vd?id=37052682

The Stereoscopic Window

Different animations of a window-like environment have been created with Blender in stereoscopic 3D.

SBML Level 3 Support

Plugin Interface for the PathwayIntegration

WS2013/2014 CELLmicrocosmos Cell Modelling

ongoing ...